I'm looking for a script that I could use to remove all homopolymer reads from my 100 bp PE reads. These are unusually overabundant in my sample.
I can't seem to find a script that will do this. I've tried to use fastx_clipper, but defining the adapter as a homopolymer, and that didn't work (defined adaptor too long?).
Any ideas?
I can't seem to find a script that will do this. I've tried to use fastx_clipper, but defining the adapter as a homopolymer, and that didn't work (defined adaptor too long?).
Any ideas?
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