Hi all,
I am trying to do some pretty naive gene ontology profiling of my RNAseq data. These data are from a de novo assembly of a lizard genome. In the past, I had used Blast2Go, but I have found it somewhat clunky to navigate.
What other options are there? I have tried downloading the GO term databases from geneontology.org, but I am not sure where to go from there. So, now, I have a list of my contigs, the gene to which they match, and a set of GO terms to which the genes match. Would it be as simple as figuring out what those GO terms mean and counting up the different categories?
Best,
sonal
I am trying to do some pretty naive gene ontology profiling of my RNAseq data. These data are from a de novo assembly of a lizard genome. In the past, I had used Blast2Go, but I have found it somewhat clunky to navigate.
What other options are there? I have tried downloading the GO term databases from geneontology.org, but I am not sure where to go from there. So, now, I have a list of my contigs, the gene to which they match, and a set of GO terms to which the genes match. Would it be as simple as figuring out what those GO terms mean and counting up the different categories?
Best,
sonal
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