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Old 04-20-2011, 10:34 AM   #1
Seq^3
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Location: US

Join Date: Nov 2010
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Cool MAF to VCF of ovarian TCGA data

Has anyone had occasion to convert a MAF file to VCF? There are converters for the opposite direction.

I am trying to convert so that I can run a GATK tool called GenomicAnnotator to annotate the amino acid change that a variant produces. Is there some other tool that would work on a MAF file directly?

Thanks and greetings!
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Old 04-06-2013, 06:48 AM   #2
dsmarcoantonio
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Location: Brazil, Ribeirão Preto

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I would use a quick python script. It is not so complicate
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