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Old 05-13-2014, 07:12 AM   #1
Krosh
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Location: Russia

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Default Removing of dupliications of mate pair reads after mapping

Could anybody say what tool I should use for removing of duplications of mate pair reads after mapping?

Thank you.
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Old 05-13-2014, 07:30 AM   #2
blancha
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http://picard.sourceforge.net/comman...MarkDuplicates
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Old 05-14-2014, 12:43 AM   #3
gt1
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Default

In my experience the following do the same thing as the Picard duplicate marking/removal and are somewhat faster:
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