Go Back   SEQanswers > Applications Forums > Epigenetics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Isoforms and downstream analysis aloliveira Bioinformatics 1 02-27-2014 01:16 PM
Downstream Analysis rjames General 9 07-23-2013 07:21 AM
Downstream Cuffdiff analysis apadr007 Bioinformatics 2 11-23-2011 01:12 PM
454 downstream analysis. aloliveira Bioinformatics 5 11-16-2011 07:10 AM
unique reads for downstream analysis bioinfosm Bioinformatics 3 07-07-2009 02:30 PM

Thread Tools
Old 08-09-2019, 12:02 AM   #1
Location: Shanghai

Join Date: Jan 2016
Posts: 12
Default Downstream analysis of methylkit

I have finished my RRBS analysis with methylkit R package. It returns me plenty of results, such as methylation distribution, coverage, clustering, annotation in the genome, DMRs and differential methylated genes.

What could I do next with the data methylkit provided? I would like to show the curves of the methylation levels on upstream +5000 bp, gene body, and downstream -5000 bp. Which pipeline or package can help me do this?

Thank you very much.

reprogrammer is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 12:56 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO