Hello everyone!
I have recently received chunks of data files (.bam/.bam.bai/.sam/fa, etc). After panicking for a moment, I started the "genomeview" program online. I was able to upload my data (.bam.bai file), then an error message popped up. Then I uploaded the .fa file for rat chromosome sequence (rn4). I am trying to annotate this data and I am at a loss. I think the problem is that my core personnel aligned the data to something different than what the Avadis NGS or the UCSC genome browser uses, so none of these programs will give me names of genes to which my samples aligned. HELP!!!
I have recently received chunks of data files (.bam/.bam.bai/.sam/fa, etc). After panicking for a moment, I started the "genomeview" program online. I was able to upload my data (.bam.bai file), then an error message popped up. Then I uploaded the .fa file for rat chromosome sequence (rn4). I am trying to annotate this data and I am at a loss. I think the problem is that my core personnel aligned the data to something different than what the Avadis NGS or the UCSC genome browser uses, so none of these programs will give me names of genes to which my samples aligned. HELP!!!
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