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Old 08-20-2009, 05:00 AM   #1
vani s kulkarni
Location: Netherlands

Join Date: Jun 2009
Posts: 11
Default velvet and SOAPdenovo assembly

I have used the velvet and SOAPdenovo for my solexa reads.
Can any one explain how can I compare cotig from both results?
I have used the same k-mer in both case.


I know that people use R for looking at the good contigs (by plotting with k-mer and other parameters), how to do that to judge K-mer or hashlength?

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