SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
23andme raw Illumina intensity reads rworthi Bioinformatics 4 12-01-2011 08:29 PM
RNA-seq analysis raw data format neetu Bioinformatics 8 10-14-2011 02:23 AM
BS-Seq Public /Sharing Data zee Bioinformatics 2 08-05-2011 11:38 AM
public data sets muchomaas Bioinformatics 2 06-08-2010 01:48 AM

Reply
 
Thread Tools
Old 10-10-2011, 08:06 AM   #1
endether
Member
 
Location: St. Louis

Join Date: Feb 2011
Posts: 11
Default Is there any public raw intensity data from RNA-Seq

Hi,

I am wondering if there is any public available raw intensity data from RNA-seq before the base calling. For my previous RNA-seq data analysis, I usually starts with fasta/fastq fomat, where I have information for each base and its quality score. Recently, I am investigating some model which makes use of the raw intensity data. If I understand it correctly, before base calling and after obtaining raw image data, there should be some intermediate steps where we can have the intensity/prob. distribution on each possible nucleotide on each base. I have googled related topics and found that ".bcl" files might be what I am looking for (please correct me if I am wrong), and I am wondering if there is any public available data as what I described.

Thanks,
Zheng

Last edited by endether; 10-10-2011 at 08:15 AM.
endether is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 02:42 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO