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Old 05-30-2012, 03:04 AM   #1
desmo
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Default Download UCSC table with mySql workbench

Does anyone know how to download tables from ucsc server with mysql workbench?
Thanks in advance
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Old 05-30-2012, 04:01 AM   #2
Anandhi
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Hello,

I am working with JAVA api for KEGG database. I am having problem using the method get_pathways_by_genes method as given in the KEGG manual. Has anybody used it?! I am unable to retrieve pathway information from a list of genes.
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Old 05-30-2012, 04:15 AM   #3
GenoMax
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This link provides info about how to log in to the public instance of MySQL at UCSC: http://genome.ucsc.edu/FAQ/FAQdownloads.html#download29

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Originally Posted by desmo View Post
Does anyone know how to download tables from ucsc server with mysql workbench?
Thanks in advance
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Old 05-30-2012, 04:17 AM   #4
GenoMax
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You should post this as a separate message since this is not related the parent question.

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Originally Posted by Anandhi View Post
Hello,

I am working with JAVA api for KEGG database. I am having problem using the method get_pathways_by_genes method as given in the KEGG manual. Has anybody used it?! I am unable to retrieve pathway information from a list of genes.
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Old 05-31-2012, 07:28 AM   #5
desmo
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Thanks. I got it!
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