SEQanswers

Go Back   SEQanswers > Applications Forums > RNA Sequencing



Similar Threads
Thread Thread Starter Forum Replies Last Post
gff3 to refFlat wangxj Bioinformatics 0 09-17-2012 11:43 PM
Annotation in GFF3 Daniel Fernandez Bioinformatics 2 06-11-2012 03:51 PM
GFF3 to RefFlat for non UCSC genomes aner RNA Sequencing 10 09-30-2011 06:11 AM
refFlat File for DEGseq newbietonextgen Bioinformatics 1 12-30-2010 08:16 AM
gff to refFlat David Lyon Bioinformatics 4 09-30-2010 11:46 AM

Reply
 
Thread Tools
Old 09-17-2012, 11:47 PM   #1
wangxj
Junior Member
 
Location: china

Join Date: Sep 2012
Posts: 7
Default gff3 to refFlat

Hi all,

I have tryed the convert-tools form UCSC (link: http://hgdownload.cse.ucsc.edu/admin...gff3ToGenePred). But It seems, the tools did not work. My input file is ITAG2.3_cdna_alignments.gff3 form the website http://solgenomics.net/itag/release/2.3/list_files. I need the refFlat file by using DEGseq package of R to analyse RNAseq.

who can help me?
wangxj is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 09:56 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO