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Old 01-11-2013, 05:19 PM   #1
dphansti
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Location: Bay Area

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Default extracting conservation scores for large sets of genomic regions

I have a bedfile. I want to get average conservation score for each of these regions. I know that I can get PhastCon scores in wig format from UCSC genome browser (ftp://hgdownload.cse.ucsc.edu/golden...6way/primates/).

Is there a way I can easily use BedTools or some other software to extract the conservation info I want. Thanks in advance.
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