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Old 07-17-2013, 12:10 AM   #1
Mali Salmon
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Location: UK

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Default large indels in targeted sequencing

Hello List
We would like to find large deletions and insertions (>30bp) in targeted sequencing data. We are wondering which technology to use for that purpose. Ion torrent? illumina? single or paired reads?
Any advice would be welcome
Thanks
Mali
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Old 07-31-2013, 10:54 PM   #2
vishnuamaram
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Default

HI Mali Salmon,

What genome are you working at.

If its human genome, as of i know- go for illumina paired end. That will be of help for your experiments.

Regards,
Vishnu.
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