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Old 03-04-2014, 12:51 PM   #1
rohan_1925
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Location: New York

Join Date: Dec 2013
Posts: 7
Default De novo assembly of reads

For de novo assembly of reads around the predicted insertion / deletion in VCF files.

1.) How many base pairs flanking the indels are required to extract reads?


2.) how low can coverage be for CAP3 to generate a local assembly?
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cap3, de novo assembly, indels, vcf

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