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Old 04-18-2013, 12:27 PM   #1
Location: Cambridge

Join Date: Apr 2013
Posts: 32
Default CASIM: ChIP-Seq of Repetitive Regions

I am particularly interested in analysing repetitive sequences in the genome - ChIP-Seq of histone modifications that are associated with simple repeats or interspersed retroelements for example. What are reliable methods for analysing sequence tags that cannot be uniquely mapped to the genome and how do I separate true differences from artefacts.
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