Hey guys,
Below is some part of the annotation file, does any one know why the coordinates of 3'UTR and the last exon are overlapped ? Which should I regard as the real 3'UTR region. (I guess several 3'UTR indicate different isoforms, but why overlap with exon happened?)
Thanks for any kindly help!
Chr2 TAIR10 mRNA 14434339 14436174 . + . ID=AT2G34185.3;Parent=AT2G34185;Name=AT2G34185.3;Index=1
Chr2 TAIR10 protein 14434402 14435302 . + . ID=AT2G34185.3-Protein;Name=AT2G34185.3;Derives_from=AT2G34185.3
Chr2 TAIR10 exon 14434339 14434555 . + . Parent=AT2G34185.3
Chr2 TAIR10 five_prime_UTR 14434339 14434401 . + . Parent=AT2G34185.3
Chr2 TAIR10 CDS 14434402 14434555 . + 0 Parent=AT2G34185.3,AT2G34185.3-Protein;
Chr2 TAIR10 exon 14435036 14435147 . + . Parent=AT2G34185.3
Chr2 TAIR10 CDS 14435036 14435147 . + 2 Parent=AT2G34185.3,AT2G34185.3-Protein;
Chr2 TAIR10 exon 14435233 14435328 . + . Parent=AT2G34185.3
Chr2 TAIR10 CDS 14435233 14435302 . + 1 Parent=AT2G34185.3,AT2G34185.3-Protein;
Chr2 TAIR10 three_prime_UTR 14435303 14435328 . + . Parent=AT2G34185.3
Chr2 TAIR10 exon 14435427 14435520 . + . Parent=AT2G34185.3
Chr2 TAIR10 three_prime_UTR 14435427 14435520 . + . Parent=AT2G34185.3
Chr2 TAIR10 exon 14435814 14436174 . + . Parent=AT2G34185.3
Chr2 TAIR10 three_prime_UTR 14435814 14436174 . + . Parent=AT2G34185.3
Below is some part of the annotation file, does any one know why the coordinates of 3'UTR and the last exon are overlapped ? Which should I regard as the real 3'UTR region. (I guess several 3'UTR indicate different isoforms, but why overlap with exon happened?)
Thanks for any kindly help!
Chr2 TAIR10 mRNA 14434339 14436174 . + . ID=AT2G34185.3;Parent=AT2G34185;Name=AT2G34185.3;Index=1
Chr2 TAIR10 protein 14434402 14435302 . + . ID=AT2G34185.3-Protein;Name=AT2G34185.3;Derives_from=AT2G34185.3
Chr2 TAIR10 exon 14434339 14434555 . + . Parent=AT2G34185.3
Chr2 TAIR10 five_prime_UTR 14434339 14434401 . + . Parent=AT2G34185.3
Chr2 TAIR10 CDS 14434402 14434555 . + 0 Parent=AT2G34185.3,AT2G34185.3-Protein;
Chr2 TAIR10 exon 14435036 14435147 . + . Parent=AT2G34185.3
Chr2 TAIR10 CDS 14435036 14435147 . + 2 Parent=AT2G34185.3,AT2G34185.3-Protein;
Chr2 TAIR10 exon 14435233 14435328 . + . Parent=AT2G34185.3
Chr2 TAIR10 CDS 14435233 14435302 . + 1 Parent=AT2G34185.3,AT2G34185.3-Protein;
Chr2 TAIR10 three_prime_UTR 14435303 14435328 . + . Parent=AT2G34185.3
Chr2 TAIR10 exon 14435427 14435520 . + . Parent=AT2G34185.3
Chr2 TAIR10 three_prime_UTR 14435427 14435520 . + . Parent=AT2G34185.3
Chr2 TAIR10 exon 14435814 14436174 . + . Parent=AT2G34185.3
Chr2 TAIR10 three_prime_UTR 14435814 14436174 . + . Parent=AT2G34185.3
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