I have RNASeq data of five different treatments (some with two time points and some with one). I am trying to think of a good visualization. Is there any tool out there to do a Venn diagram type figure of general number of up/downregulated genes to see which are shared by >1 treatment?
I am also happy for any input on how to attack such a massive amount of data (where to put the cutoff - I have been using 1.5 fold expression difference from control, FPKM of at least 10) and how to do pathway enrichment analyses, etc.
Thanks!
I am also happy for any input on how to attack such a massive amount of data (where to put the cutoff - I have been using 1.5 fold expression difference from control, FPKM of at least 10) and how to do pathway enrichment analyses, etc.
Thanks!
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