Hi,
I have run velvet-oases on k-mers 21 thru 55, and I am trying to merge the assemblies now. I tried using the velveth --> velvetg --> oases approach from the "Assembly Merging" section of the manual, but velvetg runs for an abnormally long duration (>48 hours), and the cluster on which I'm running the script times out.
I have tried providing 244 GB of RAM, but it makes no difference - the "Log" file from velveth is written to once when the script starts running, and no other file(including the redirected stderr/stdout) is touched for the entire duration of the run.
Any idea how I could tackle this?
--
Thanks,
Ram
I have run velvet-oases on k-mers 21 thru 55, and I am trying to merge the assemblies now. I tried using the velveth --> velvetg --> oases approach from the "Assembly Merging" section of the manual, but velvetg runs for an abnormally long duration (>48 hours), and the cluster on which I'm running the script times out.
I have tried providing 244 GB of RAM, but it makes no difference - the "Log" file from velveth is written to once when the script starts running, and no other file(including the redirected stderr/stdout) is touched for the entire duration of the run.
Any idea how I could tackle this?
--
Thanks,
Ram
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