SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
RNA-Seq Data Analysis Workshop in Berlin, Germany ecSeq Bioinformatics Events / Conferences 0 02-05-2018 10:27 AM
RNA-Seq Data Analysis Workshop in Berlin, Germany ecSeq Bioinformatics Bioinformatics 2 02-05-2018 05:24 AM
RNA-Seq Data Analysis Workshop in Berlin (some last seats left) ecSeq Bioinformatics RNA Sequencing 2 02-07-2017 04:25 AM
A Beginner's Guide to RNA-Seq Data Analysis (1 - 5 February 2016 in Leipzig, Germany) ecSeq Bioinformatics Bioinformatics 2 01-22-2016 12:48 AM

Reply
 
Thread Tools
Old 07-10-2018, 01:16 AM   #1
Physalia-courses
Member
 
Location: Berlin

Join Date: May 2017
Posts: 12
Default Course. Analysis of single cell RNA-seq data.25 February-1 March 2019 in Berlin (Germ



Analysis of single cell RNA-seq data


When: 25 February-1 March 2019


When: FU University in Berlin


Instructors:

Dr. Ayshwarya Subramanian (Harvard School of Public Health, Broad Institute, Dana-Farber Cancer Institute, US)

Dr. Dana Silverbush (Harvard School of Public Health, Broad Institute, Dana-Farber Cancer Institute, US)

Dr. Ehsan Habibi (Harvard School of Public Health, Broad Institute, Dana-Farber Cancer Institute, US)



Course overview

In recent years single-cell RNA-seq (scRNA-seq) has become widely used for transcriptome analysis in many areas of biology. In contrast to bulk RNA-seq, scRNA-seq provides quantitative measurements of the expression of every gene in a single cell. However, to analyze scRNA-seq data, novel methods are required and some of the underlying assumptions for the methods developed for bulk RNA-seq experiments are no longer valid. In this course we will cover all steps of the scRNA-seq processing, starting from the raw reads coming off the sequencer. The course includes common analysis strategies, using state-of-the-art methods and we also discuss the central biological questions that can be addressed using scRNA-seq.



Course Format

The course will be delivered over the course of five days. Each day will include a lecture and laboratory component. The lecture will introduce the topics of discussion and the laboratory sessions will be focused on practical hands-on analysis of scRNA-seq data. These sessions will involve a combination of both mirroring exercises with the instructor to demonstrate a skill as well as applying these skills on your own to complete individual exercises. After and during each exercise, interpretation of results will be discussed as a group. Computing will be done using a combination of tools installed on the attendees laptop computer and web resources accessed via web browser.



Targeted Audience & Assumed Background

This course is aimed at researchers and technical workers who are or will be analyzing scRNA-seq data. The material is suitable both for experimentalists who want to learn more about data-analysis as well as computational biologists who want to learn about scRNASeq methods. Examples demonstrated in this course can be applied to any experimental protocol or biological system.



The requirements for this course are:
  • Working knowledge of unix (managing files, running programs)
  • Programming experience in R (writing a function, basic I/O operations, variable types, using packages).
  • Bioconductor experience is a plus.
  • Familiarity with NGS data and its analyses (using alignment and quantification tools for bulk sequencing data)
Physalia-courses is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 12:39 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO