Hi,
I am new to Chip-Seq data analysis and I am interested in doing this kind of analysis given a genomic position range
Find enrichment in H3K4me(1 and 3)
H3K9,14Ac
P300 occupancy
DNAse activity sites
TFBS
I would like to know from where to start, which data I have to get and from where ? I've seen a lot of data in ftp://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/ but the read me file is not informative for a newbie
My second question is what are the best open source tools to use for these kind of analysis and what are the steps to follow (all the tutorials part are dealing with explaining what is chipseq and not how to analyze the data ? )
Thank you for your help
I am new to Chip-Seq data analysis and I am interested in doing this kind of analysis given a genomic position range
Find enrichment in H3K4me(1 and 3)
H3K9,14Ac
P300 occupancy
DNAse activity sites
TFBS
I would like to know from where to start, which data I have to get and from where ? I've seen a lot of data in ftp://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/ but the read me file is not informative for a newbie
My second question is what are the best open source tools to use for these kind of analysis and what are the steps to follow (all the tutorials part are dealing with explaining what is chipseq and not how to analyze the data ? )
Thank you for your help
Comment