I have run TrinotateWeb with the test data (and can view via the web interface and all), but I am confused by the usage with my own data.
Specifically, when I Populate Trinotate.sqlite with Transcript Expression Clusters, should the option "--DE_dir edgeR_trans/ \" simply be the absolute path to where all of my edgerR outputs are for the dataset?
Further, should the samples_n_reads_described.txt file just be manually made? That is, a modification of the provided sample, to suit my experiment?
Thank you,
Anthony
Specifically, when I Populate Trinotate.sqlite with Transcript Expression Clusters, should the option "--DE_dir edgeR_trans/ \" simply be the absolute path to where all of my edgerR outputs are for the dataset?
Further, should the samples_n_reads_described.txt file just be manually made? That is, a modification of the provided sample, to suit my experiment?
Thank you,
Anthony
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