SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
ChIP-seq peak caller that handles biological replicates AnnaE Bioinformatics 6 05-13-2015 01:49 PM
ChIP-Seq: PeakRanger: A cloud-enabled peak caller for ChIP-seq data. Newsbot! Literature Watch 0 05-11-2011 04:40 AM

Reply
 
Thread Tools
Old 11-13-2014, 04:37 AM   #1
ManuelRWTHaices
Junior Member
 
Location: Germany

Join Date: Nov 2014
Posts: 1
Default ODIN - A Differential Peak Caller for ChIP-seq data

I am happy to announce the tool ODIN, which our lab is using to analyse ChIP-seq data.

ODIN is an HMM-based approach to detect and analyse differential peaks in pairs of ChIP-seq data. ODIN performs genomic signal processing, peak calling and p-value calculation in an integrated framework.

For further details, please see

http://www.regulatory-genomics.org/odin-2/

or

http://seqanswers.com/wiki/ODIN
ManuelRWTHaices is offline   Reply With Quote
Old 11-23-2015, 11:31 AM   #2
[email protected]
Junior Member
 
Location: Aachen

Join Date: Nov 2015
Posts: 5
Default

Dear all,

We have currently released a THOR, a HMM based methods, for differential peak calling with replicates.

http://www.regulatory-genomics.org/THOR

best regards,

Ivan Costa
ivan.costa@rwth-aachen.de is offline   Reply With Quote
Reply

Tags
chip-seq, differential peak caller, genomics, hmm

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 06:16 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2017, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO