SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
PubMed: Extracting transcription factor targets from ChIP-Seq data. Newsbot! Literature Watch 0 06-26-2009 06:00 AM

Reply
 
Thread Tools
Old 02-08-2017, 02:54 PM   #1
luisnagano
Junior Member
 
Location: Campinas, Brazil

Join Date: Feb 2017
Posts: 1
Smile Find Chip-seq targets in Rna-seq data?

Hi, I want to select my target genes found in my ChIP-seq data (Genes Names by HOMER) within my Cuffdiff output list of differentially expressed genes (RNA-seq data), so I can select cufflinks genes ids of target genes (“XLOC_” ids), selecting the lines table from my cuffdiff file where are the specific target genes names, so I can create heatmaps of these genes using RNA-seq data in R. Can someone give me a simple solution?
I just want select gene names lines in my cuffdiff table

Thank you!

Last edited by luisnagano; 02-08-2017 at 03:59 PM. Reason: improve information message
luisnagano is offline   Reply With Quote
Reply

Tags
chip-seq, cuffdiff, cufflinks, rna-seq

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 11:45 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2017, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO