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  • #1

    refseq in BSP output file using BSMAP

    I just used BSMAP developed by Xi & Li to process a RRBS dataset. It worked very well. But I noticed that each refseq in the BSP output file has two extra bases on both ends than its corresponding seq, i.e., there are 40 (=2+36+2) bases in the refseq for an RRBS read seq with 36 bases.

    I am wondering why the extra bases are put there. Does anybody know a way to get rid of the extra bases?

    Thanks a lot!
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