Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Building a GTF file

    How would I go about building a GTF file from either the FASTA file or from this infromation

  • #2
    I think in FASTA there is no enough information to create a GTF file, but genebank files can be converted by this one.

    Comment


    • #3
      Thank you very much! I'm starting the process now.

      Comment


      • #4
        Running Python

        Ok I can't seem to get the python program to run, I've moved the file over to our server and tried to run it using the command given -
        "cat file.gb | gb2gtf.py > file.gtf"
        by inserting my files location for file.gb and then putting the output for file.gtf. I still receive the error -
        gb2gtf.py: command not found

        *****
        Had to include the directory for the program as well
        *****
        Last edited by Aholton; 09-04-2012, 12:25 PM. Reason: Solved Issue

        Comment

        Latest Articles

        Collapse

        • seqadmin
          Essential Discoveries and Tools in Epitranscriptomics
          by seqadmin




          The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
          04-22-2024, 07:01 AM
        • seqadmin
          Current Approaches to Protein Sequencing
          by seqadmin


          Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
          04-04-2024, 04:25 PM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by seqadmin, Today, 08:47 AM
        0 responses
        12 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 04-11-2024, 12:08 PM
        0 responses
        60 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 04-10-2024, 10:19 PM
        0 responses
        59 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 04-10-2024, 09:21 AM
        0 responses
        54 views
        0 likes
        Last Post seqadmin  
        Working...
        X