Hi all
We may be splashing out on an IonTorrent here in Leicester. How does everyone cope with the FASTQ files, and what flavour FASTQ format are they in? I'm considering starting a pipeline using Galaxy and LastZ, but are there any other remapping softwares that do well with longer reads (i.e. not the short 35bp reads that Bowtie etc are optimised for?)
Ed
We may be splashing out on an IonTorrent here in Leicester. How does everyone cope with the FASTQ files, and what flavour FASTQ format are they in? I'm considering starting a pipeline using Galaxy and LastZ, but are there any other remapping softwares that do well with longer reads (i.e. not the short 35bp reads that Bowtie etc are optimised for?)
Ed
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