Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
No clusters or low intensity clusters on MiSeq runs phyllosphere Illumina/Solexa 13 01-08-2016 08:37 AM
Synteny / homology search tool hbn Bioinformatics 1 12-12-2013 10:20 AM
Obtaining Random Sequences from Given Taxonomic Grouping afitz Bioinformatics 2 11-14-2013 07:36 PM
Retrieving sequences from CD-HIT clusters Tectona Bioinformatics 0 10-03-2012 02:00 AM
clusters per tile to clusters mm2 niceday General 3 07-27-2011 06:35 AM

Thread Tools
Old 06-22-2018, 01:00 AM   #1
Junior Member
Location: Russia

Join Date: Jun 2018
Posts: 1
Default Tool for grouping sequences into clusters with homology within each above threshold

Is there a tool/script/algorithm for grouping sequences into bins so that within each group homology for any two sequences is above (or equal to) a certain threshold value (unless there's only one sequence in a bin)? Some sequences may end up being chimeric, some bins may end up containing a single sequence but only if they don't fit into all other bins. Asked this on biostars, but got no replies.

Last edited by prishlyK; 06-22-2018 at 01:03 AM.
prishlyK is offline   Reply With Quote
Old 06-22-2018, 03:02 AM   #2
Senior Member
Location: East Coast USA

Join Date: Feb 2008
Posts: 6,783

Take a look at CD-HIT.
GenoMax is offline   Reply With Quote

alignment, ngs, sequence clustering

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 08:19 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO