SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
How to transform BAM format to .TXT or .BED? zhenshao Bioinformatics 12 11-14-2015 05:03 PM
How to convert sra-lite format to fastq? tbusch0000 Bioinformatics 23 08-21-2013 08:53 PM
SRA format papori RNA Sequencing 3 05-11-2011 11:38 AM
FASTQ format question ashah Bioinformatics 3 06-28-2010 09:13 AM
Illumina FASTQ format question... scozza Bioinformatics 5 10-26-2009 01:55 AM

Reply
 
Thread Tools
Old 05-16-2010, 10:56 PM   #1
areyousad
Junior Member
 
Location: hong kong

Join Date: May 2010
Posts: 1
Default Question about using sra_toolkit to transform the SRA format into FASTQ format

1.the raw data is the pair-end illumina GA2 data, but after the transformation
the result contains 3: xxxx_1.fastq,xxxx_2.fastq,xxxx.fastq,and the xxxx.fastq 's size is very small. Is that means xxxx.fastq is the unpaired reads?

2.I use the fastq-dump command, is that suitable to the sequencing value of illumina GA2? or I should try the illumina-dump...

I am a rookie. Thank you all guys in advance
areyousad is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 02:12 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO