SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Newbie to MiSeq, QIIME workflow question rc630 Illumina/Solexa 2 01-15-2016 06:34 PM
Question about Qiime otu picking illuminaGA Bioinformatics 0 01-06-2015 09:08 AM
Question about Qiime assign taxonomy result Waiting Bioinformatics 0 09-30-2014 04:03 AM
Question: blast2go local www-blast not working AdrianP Bioinformatics 7 02-12-2014 12:15 AM
how to summarize information for a gene from bam file roll Bioinformatics 3 11-13-2013 03:52 PM

Reply
 
Thread Tools
Old 01-25-2016, 12:25 PM   #1
rc630
Junior Member
 
Location: USA

Join Date: Jan 2016
Posts: 5
Default QIIME question: Summarize Taxa Through Plots not working

I have run the pick_open_reference_otus.py on my data and generated the biom files and final_OTU_maps from this. When I try to run the summarize_taxa_through_plots.py, I am getting this error:

"ValueError: BIOM table does not contain any observation metadata (e.g., taxonomy). You can add metadata to it using the 'biom add-metadata' command"

Am I missing something about adding observation metadata to the file? Where in the files I generated would the observational data be? I have a feeling I am missing a step in my processing pipeline.

Apologizes if I seem daft, this is my first experience with bioinformatics at all.
rc630 is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 09:49 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO