SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Getting very low numbers of annotated reads from STAR/mm10 analog900 Bioinformatics 8 01-12-2016 11:02 AM
UCSC mm10 gtf file heso Bioinformatics 3 11-17-2014 12:57 AM
SOAP Fusion with mm10 hbuchman Bioinformatics 0 06-15-2014 11:44 PM
vcf file for mm10 dbsnp? JPreston Bioinformatics 4 05-27-2014 08:14 AM
Mouse (MM10) SNPs jkozubek Bioinformatics 2 03-27-2013 05:26 PM

Reply
 
Thread Tools
Old 01-26-2016, 09:06 AM   #1
deep639
Member
 
Location: Irvine

Join Date: Dec 2013
Posts: 10
Default mm10 female mouse

I aligned samples from a female mouse to the mm10 genome, the samples were Illumina sequenced samples. After alignment, I found some reads aligned to chrY, are these reads false positive/artifacts. I read also that this can happen in human samples so could it be the same thing here in mouse? Thank you.
deep639 is offline   Reply With Quote
Old 01-26-2016, 09:15 AM   #2
GenoMax
Senior Member
 
Location: East Coast USA

Join Date: Feb 2008
Posts: 6,885
Default

MSY: doi:10.1016/j.cell.2014.09.052 (http://www.ncbi.nlm.nih.gov/pubmed/25417157)?
GenoMax is offline   Reply With Quote
Old 01-26-2016, 09:25 AM   #3
deep639
Member
 
Location: Irvine

Join Date: Dec 2013
Posts: 10
Default

thanks for the link
deep639 is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 06:20 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO