Hi,
Can anyone advise me why two output files from a paired end run differ in size? The file for run 2 is about 2 times bigger than for read 1, so I thought it inlcudes both reads 1 and reads 2. Yet, the end strings of each read name (either 1:N:0:1 in read 1 or 2:N:0:1 in read 2) indicate this is not the case. So why the difference?
Can anyone advise me why two output files from a paired end run differ in size? The file for run 2 is about 2 times bigger than for read 1, so I thought it inlcudes both reads 1 and reads 2. Yet, the end strings of each read name (either 1:N:0:1 in read 1 or 2:N:0:1 in read 2) indicate this is not the case. So why the difference?
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