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Old 09-14-2011, 09:03 AM   #1
CNVboy
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Location: boston

Join Date: Jun 2011
Posts: 27
Default Variation-Hunter empty output

I don't know if anyone here has used Variation-Hunter.
I used the *.vh files generated from mrFAST as the input of Variation-Hunter.

But it seems I only get empty output.
Code:
15M ERR001269_110_output_DIVET.vh
8.0K ERR001269_110_output_DIVET.vh.Chr1
8.0K ERR001269_110_output_DIVET.vh.Chr10
8.0K ERR001269_110_output_DIVET.vh.Chr10.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr11
8.0K ERR001269_110_output_DIVET.vh.Chr11.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr12
8.0K ERR001269_110_output_DIVET.vh.Chr12.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr13
8.0K ERR001269_110_output_DIVET.vh.Chr13.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr14
8.0K ERR001269_110_output_DIVET.vh.Chr14.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr15
8.0K ERR001269_110_output_DIVET.vh.Chr15.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr16
8.0K ERR001269_110_output_DIVET.vh.Chr16.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr17
8.0K ERR001269_110_output_DIVET.vh.Chr17.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr18
8.0K ERR001269_110_output_DIVET.vh.Chr18.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr19
8.0K ERR001269_110_output_DIVET.vh.Chr19.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr1.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr2
8.0K ERR001269_110_output_DIVET.vh.Chr20
8.0K ERR001269_110_output_DIVET.vh.Chr20.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr21
8.0K ERR001269_110_output_DIVET.vh.Chr21.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr22
8.0K ERR001269_110_output_DIVET.vh.Chr22.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr23
8.0K ERR001269_110_output_DIVET.vh.Chr23.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr24
8.0K ERR001269_110_output_DIVET.vh.Chr24.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr2.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr3
8.0K ERR001269_110_output_DIVET.vh.Chr3.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr4
8.0K ERR001269_110_output_DIVET.vh.Chr4.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr5
8.0K ERR001269_110_output_DIVET.vh.Chr5.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr6
8.0K ERR001269_110_output_DIVET.vh.Chr6.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr7
8.0K ERR001269_110_output_DIVET.vh.Chr7.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr8
8.0K ERR001269_110_output_DIVET.vh.Chr8.RR_FF
8.0K ERR001269_110_output_DIVET.vh.Chr9
8.0K ERR001269_110_output_DIVET.vh.Chr9.RR_FF
8.0K ERR001269_110_output_DIVET.vh.FullChr.RR_FF
7.9M ERR001269_110_output_DIVET.vh.Name.Edit.Prob
104K ERR001269_110_output_DIVET.vh.Name.MinEdit.TotalProb
 13M ERR001269_110_output_DIVET.vh.Prob.Clean
 15M ERR001269_110_output_DIVET.vh.Prob.Full
 16K ERR001269_110_output_DIVET.vh.SV
8.0K ERR001269_110_output_DIVET.vh.SV.Deletion
8.0K ERR001269_110_output_DIVET.vh.SV.Insertion
8.0K ERR001269_110_output_DIVET.vh.SV.Inversion
Anyone has any idea about that?

thx
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