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Old 08-12-2013, 01:06 AM   #1
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Join Date: May 2013
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Smile For ChIP-seq, maximal coverage at a peak?

For ChIP-seq data, what is the maximal coverage at a peak? How to calculate it? Thank you!!!

The coverage is defined as :
Number of (extended) reads aligning over each nucleotide position. Is this correct?

If yes, so the maximal coverage at a peak is the number of reads aligning at the summit of that peak?

Last edited by xxatbio; 08-12-2013 at 02:05 AM.
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chip-seq, macs

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