Question: Metatranscriptome assemblers

[apratap]

Hi Everyone

Just wanted to know what assemblers/pipelines people are using for assembling metatranscriptomes. We have data sets from 200 million to few billion reads and are interested to know the methods that we could try.

My aim is to build a laundry list of software's out there that could be used for this purpose based on your experience.

PS: I posted this a while ago on biostars and heard from one person. I am hoping there are a lot more people trying to assemble meta-transcriptomes

http://www.biostars.org/post/show/44884/metatranscriptome-assemblers/

Thanks!
-Abhi