Hi,
I am trying to use some tools from kent src, particularly the twobit2fa to convert the hg19.2bit file to fasta.
In the past, when I've tried to work with Kent, I always get some kind of error and have been able to circumvent it somehow. This time I am trying to compile twobit2fa and I am getting this error message:
gcc -O -g -Wall -Wno-unused-variable -o /Users/kizeeetienne/bin//twoBitToFa twoBitToFa.o ../../lib//jkweb.a -pthread -lssl -lcrypto -lpng -lm
i686-apple-darwin11-llvm-gcc-4.2: ../../lib//jkweb.a: No such file or directory
make: *** [twoBitToFa] Error 1
Could some pls explain what this means; I am new to Bioinfo and have no idea what to do with this error. Something tells me that it is a compatibility issue with mac osx and kent but I have no idea how to fix it???
I would love to get rid of this problem with Kent once and for all before it comes back to haunt me for the third and fourth times.
Thanks
I am trying to use some tools from kent src, particularly the twobit2fa to convert the hg19.2bit file to fasta.
In the past, when I've tried to work with Kent, I always get some kind of error and have been able to circumvent it somehow. This time I am trying to compile twobit2fa and I am getting this error message:
gcc -O -g -Wall -Wno-unused-variable -o /Users/kizeeetienne/bin//twoBitToFa twoBitToFa.o ../../lib//jkweb.a -pthread -lssl -lcrypto -lpng -lm
i686-apple-darwin11-llvm-gcc-4.2: ../../lib//jkweb.a: No such file or directory
make: *** [twoBitToFa] Error 1
Could some pls explain what this means; I am new to Bioinfo and have no idea what to do with this error. Something tells me that it is a compatibility issue with mac osx and kent but I have no idea how to fix it???
I would love to get rid of this problem with Kent once and for all before it comes back to haunt me for the third and fourth times.
Thanks
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