I am trying to run my Silva BLAST results through the SEED and KEGG Analyzers in MEGAN. I understand that the blast file needs to have RefSeq ID's in order to work with the analyzers. It seems there is a "synonyms file", provided by MEGAN, to use with Silva results in order to map correctly; however, it is unclear if this is just for the taxonomic analysis, or also works for the SEED/KEGG analysis...
I've tried using the synonyms file, and I do get KEGG/SEED results, but they consist purely of "no hits" and "unassigned", so something isn't quite right...
Any help would be much appreciated! Thanks!
I've tried using the synonyms file, and I do get KEGG/SEED results, but they consist purely of "no hits" and "unassigned", so something isn't quite right...
Any help would be much appreciated! Thanks!
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