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Old 07-03-2013, 12:48 AM   #1
Location: China

Join Date: Jan 2012
Posts: 12
Default can cuffdiff handle the samples with different treatments and a time series?

Hi friends,
Recently, I got a problem, I have two treated samples, one is KO, and the other is WT (as control), and the two samples also have a time series. In other words, I have four sequencing samples: KO0h, KO5h, WT0h, and WT5h.

What I should do with cuffdiff?
Grateful to any suggestions
Thanks very much!
Triple_W is offline   Reply With Quote
Old 10-10-2013, 11:59 AM   #2
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Location: Norway

Join Date: Aug 2013
Posts: 266

Im wondring the same....
sindrle is offline   Reply With Quote

cuffdiff, knockout, time-course, wildtype

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