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Old 10-30-2011, 06:32 PM   #1
yhong
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Location: South Korea

Join Date: Aug 2011
Posts: 3
Default Question abbout CNVnator output

I am using CNVnator for CNV detection.
I understand the following output after CNV calling:
duplication chr1:102641001-102644000 3000 1.70069 0.025451 16526.9

Using this CNV info, CNVnator does genotyping with -genotype option.
Given the following command:
./cnvnator -root file.root -genotype 1000
>chr1:102641001-102644000


CNVnator gave me the following output:
Genotype chr1:102641001-102644000 file.root 3.26707 3.26707

Here are my questions..
Does anyone know what the last two values mean?
Also, if either of the values is log2ratio, is there any way getting log2ratio value for each CNV detected by CNVnator?

Thank you very much in advance!

Best,
yhong
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Old 11-02-2011, 04:40 AM   #2
gprakhar
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Location: India

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Default

Hi,

Please read the last few posts of this thread.
http://seqanswers.com/forums/showthread.php?t=11013

Regards,
--
pg
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