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05-24-2013, 01:51 AM
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#1 |
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Member
Location: China Join Date: Jan 2012
Posts: 12
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Tophat result: how to get the number for novel junctions
hi,
tophat can output a file junctions.bed including the splicing sites for junction reads. Can I get novel splicing sites that tophat identified from known ones given by reference gene annotations? Any suggestions would be appreciated. |
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07-03-2013, 12:44 AM
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#2 |
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Member
Location: China Join Date: Jan 2012
Posts: 12
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can cuffdiff handle the samples with different treatments and a time series?
any suggestions?
Last edited by Triple_W; 07-03-2013 at 12:51 AM. |
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| Tags |
| junctions, splicing annotation, tophat 2.0.8b |
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