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  • Annotating SNPs from mapping locational information

    Hi,

    We have a few thousand RAD SNPs which were characterized using a partially annotated genome.


    SNP identifies look as follows. gb indicates the genome contig where the SNP is found

    gi|354458801|gb|AGKD01000248.1|.0000029886

    Can anyone indicate the easiest way to annotate these SNPs?
    I imagine this would involve pulling useful annotation information from the genome where possible, and then estimating GO terms by BLASTing unannotated contains?

    Thanks in advance

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