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07-21-2012, 09:07 AM
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Senior Member
Location: chicago Join Date: Jul 2012
Posts: 354
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samtools view
If use samtools view <bam> chr11:532635-532755 I get 53 reads and (~20kb file). Using batch (to run the attahed command) the chr11:532635-532755 I get 2064 reads and (~720kb file). I am not sure if I am doing something wrong or which file is accurate. Thank you and have a nice weekend.
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