SEQanswers

Go Back   SEQanswers > Applications Forums > RNA Sequencing



Similar Threads
Thread Thread Starter Forum Replies Last Post
Genome assembly and Rna-seq mapping freestile Bioinformatics 12 11-11-2014 09:25 AM
Question on mapping quality and uniquely mapped read chenyao Bioinformatics 6 12-10-2012 03:18 AM

Reply
 
Thread Tools
Old 01-28-2015, 07:49 AM   #1
Julien Roux
Member
 
Location: Chicago

Join Date: Dec 2011
Posts: 24
Default Influence of quality of genome assembly for RNA-seq read mapping

Dear all,
I am wondering how much the quality of the reference genome assembly influences RNA-seq read mapping (for example Illumina reads mapped to the genome with Tophat). I could not find any published study addressing this question.

Do you know any paper where RNA-seq mapping rates and quality are compared between model species genomes, draft genomes and de novo assembled genomes?

Thanks!
Julien
Julien Roux is offline   Reply With Quote
Reply

Tags
genome assembly, mapping, quality, rna-seq

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 09:08 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO