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05-09-2013, 07:20 PM
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#1 |
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Junior Member
Location: Hawaii Join Date: Jan 2013
Posts: 6
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Time to run variant caller plugin for Ion Torrent
I want to process some mouse genomes on an ion torrent with a 10G chip and I'd like to use the variant caller plugin. Does anyone have any idea how long that could take to run on one of their servers?
Thank you! |
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05-13-2013, 05:26 PM
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#2 |
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Member
Location: Rockville, MD Join Date: Apr 2011
Posts: 23
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The PGM doesn't have a 10G chip.
Do you mean the Proton system? That will get you about 100M reads at 200bp; should take a couple of hours on the hardware that ships with the Proton (if you use the Life Tech variant caller). |
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08-21-2013, 04:05 PM
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#3 |
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Member
Location: washington Join Date: Aug 2013
Posts: 70
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Torrent Suite for Mac
I was also wondering if there is any manuals or anything about how to use the torrent suite modules such as the analysis module
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