SEQanswers

Go Back   SEQanswers > Sequencing Technologies/Companies > Ion Torrent

Similar Threads
Thread Thread Starter Forum Replies Last Post
Ion Torrent $1000 Genome!? Benchtop Ion Proton Sequencer aeonsim Ion Torrent 88 10-28-2012 05:50 AM
variant caller that can accomodate mosaicism? ymc Bioinformatics 0 08-21-2012 05:46 PM
any recommandation on variant caller for SOLiD data ? pandafengye Genomic Resequencing 1 04-25-2012 08:22 AM
Ion Torrent, how much to run? brianlamx Ion Torrent 18 08-31-2011 03:12 PM
Time for Ion Torrent and PacBio sections? krobison Site Feedback/Suggestions 3 02-24-2011 08:15 AM

Reply
 
Thread Tools
Old 05-09-2013, 07:20 PM   #1
g3n3
Junior Member
 
Location: Hawaii

Join Date: Jan 2013
Posts: 6
Default Time to run variant caller plugin for Ion Torrent

I want to process some mouse genomes on an ion torrent with a 10G chip and I'd like to use the variant caller plugin. Does anyone have any idea how long that could take to run on one of their servers?
Thank you!
g3n3 is offline   Reply With Quote
Old 05-13-2013, 05:26 PM   #2
jonathanjacobs
Member
 
Location: Rockville, MD

Join Date: Apr 2011
Posts: 23
Default

The PGM doesn't have a 10G chip.

Do you mean the Proton system? That will get you about 100M reads at 200bp; should take a couple of hours on the hardware that ships with the Proton (if you use the Life Tech variant caller).
jonathanjacobs is offline   Reply With Quote
Old 08-21-2013, 04:05 PM   #3
lwhitmore
Member
 
Location: washington

Join Date: Aug 2013
Posts: 70
Default Torrent Suite for Mac

I was also wondering if there is any manuals or anything about how to use the torrent suite modules such as the analysis module
lwhitmore is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 01:20 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO