bwa trouble making index

wingtec · 10-16-2013, 09:01 AM

Hi,

While I was trying to make index for bwa, I encountered this error:

d-128-61-165:bwa-0.7.5a xxx$ ./bwa index -p EMCTargetbwaidx -a bwtsw EntamoebaCTarget.fa
[bwa_index] Pack FASTA... 0.00 sec
[bwa_index] Construct BWT for the packed sequence...
[BWTIncCreate] textLength=21312, availableWord=65536
Segmentation fault

First I thought it was some characters not allowed in the ">" line but it did not seem to be the case after I made very sure no special characters or space in the first line.

Wonder if anyone would enlighten me what the problem is.

Thanks

Wing

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10-16-2013, 09:01 AM	#1
wingtec Member Location: Charlottesville, VA Join Date: Apr 2010 Posts: 34	bwa trouble making index Hi, While I was trying to make index for bwa, I encountered this error: d-128-61-165:bwa-0.7.5a xxx$ ./bwa index -p EMCTargetbwaidx -a bwtsw EntamoebaCTarget.fa [bwa_index] Pack FASTA... 0.00 sec [bwa_index] Construct BWT for the packed sequence... [BWTIncCreate] textLength=21312, availableWord=65536 Segmentation fault First I thought it was some characters not allowed in the ">" line but it did not seem to be the case after I made very sure no special characters or space in the first line. Wonder if anyone would enlighten me what the problem is. Thanks Wing