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08-30-2017, 10:10 AM
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#1 |
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Junior Member
Location: Iowa Join Date: Aug 2017
Posts: 1
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Program for clustering rna seq reads using protein database
I have an RNA Seq data that I have used to assemble a de novo transcriptome, however, I am having trouble clustering it down into a final set of putative transcripts. I have used the Corset pipeline to cluster it down to 160,000 "genes" right now but beyond that I am stuck.
I have two unpublished protein databases for close relatives of my model and I was wondering if anyone had any suggestions for programs to map my putative transcripts to and cluster them even more? |
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| Tags |
| clustering, de novo, mapping reads, proteome, transcriptome |
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