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04-19-2018, 04:49 AM
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Junior Member
Location: Netherlands Join Date: Nov 2014
Posts: 8
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BLAST taxid to complete linage using biopython on a local machine.
Hello all,
Using BLAST, I am trying to identify thousands of sequences. To make my job a bit easier, I would like to classify these sequences first by sorting them on phylum e.g. only keep BLAST hits from a certain pylum. To do this, I need to generate het complete linage of the hit using the NCBI taxonomic database. I know you can query the database with biopython. over the internet, but the machine I am working on has no internet access. Could anyone give me some insight into this? |
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| Tags |
| biopython, blast, parsing, taxonomy |
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