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10-24-2019, 07:53 AM
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#1 |
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Member
Location: Charlottesville, VA Join Date: Apr 2010
Posts: 34
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analyze kallisto rnaseq data
Hi All,
I wonder how people analyze Kallisto data (estimated counts), using any bioconductor packages? Thanks Wingtec |
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10-28-2019, 03:45 AM
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#2 |
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Junior Member
Location: Munich Join Date: Jun 2017
Posts: 8
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you can use the tximport package to import kallisto output into R and then just use DEseq2. See here:https://bioconductor.org/packages/re.../tximport.html
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