Go Back   SEQanswers > Applications Forums > RNA Sequencing

Similar Threads
Thread Thread Starter Forum Replies Last Post
Diff expression: pooling reads of replicates/treatments for de-novo assembly CarlosVM RNA Sequencing 2 01-10-2014 04:05 AM
Extract reads according to selected indexes (MiSeq)) nazen Bioinformatics 2 06-13-2012 12:25 AM
Ideas for shearing and/or size-selected FFPE DNA? durandg Sample Prep / Library Generation 0 05-15-2012 09:40 AM
Alignment to selected region of the reference genome houkto General 1 02-20-2012 06:51 AM
non-PolyA selected RNA-Seq in BodyMap project mrfox Illumina/Solexa 1 04-04-2011 05:55 AM

Thread Tools
Old 03-22-2013, 11:31 AM   #1
Junior Member
Location: Nashville, TN

Join Date: Nov 2011
Posts: 7
Default cummeRbund andplotting for selected treatments among multiple treatments

I have 16 different treatments which are t-tested in cuffdiff and I was wondering if there is a way to plot (like expressionBarplot) in cummeRbund for some of these treatments and not all of them.
in sVolcano we can tell the output to be for just two samples like this:
csVolcano(genes(cuff),'hESC', 'Fibroblasts')
but for expressionBarplot we dont have this option.
ataheri is offline   Reply With Quote
Old 04-10-2013, 07:41 PM   #2
Location: Cambridge, MA

Join Date: Feb 2008
Posts: 82

Check out the 'sampleIdList' argument to getGenes(). This should do what you require.

lgoff is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 06:23 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO