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Old 03-22-2013, 11:31 AM   #1
ataheri
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Location: Nashville, TN

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Default cummeRbund andplotting for selected treatments among multiple treatments

I have 16 different treatments which are t-tested in cuffdiff and I was wondering if there is a way to plot (like expressionBarplot) in cummeRbund for some of these treatments and not all of them.
in sVolcano we can tell the output to be for just two samples like this:
csVolcano(genes(cuff),'hESC', 'Fibroblasts')
but for expressionBarplot we dont have this option.
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Old 04-10-2013, 07:41 PM   #2
lgoff
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Default

Check out the 'sampleIdList' argument to getGenes(). This should do what you require.

Cheers,
Loyal
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