clustering short reads

lpantano · 02-02-2010, 03:34 AM

Hello, and sorry if in some other thread is the answer. But I would like to cluster short reads from solexa technology. These reads are from 15 nt to 26 nt long. Do you now some program that does it???

thanks very much

maasha · 02-02-2010, 04:39 AM

Uclust by Bob Edgar

Zigster · 02-02-2010, 06:56 AM

vmatch is pretty good at this

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02-02-2010, 03:34 AM	#1
lpantano Member Location: spain Join Date: Feb 2010 Posts: 11	clustering short reads Hello, and sorry if in some other thread is the answer. But I would like to cluster short reads from solexa technology. These reads are from 15 nt to 26 nt long. Do you now some program that does it??? thanks very much

02-02-2010, 06:56 AM	#3
Zigster (Jeremy Leipzig) Location: Philadelphia, PA Join Date: May 2009 Posts: 116	vmatch is pretty good at this __________________ -- Jeremy Leipzig Bioinformatics Programmer -- My blog Twitter

02-02-2010, 04:39 AM	#2
maasha Senior Member Location: Denmark Join Date: Apr 2009 Posts: 153	Uclust by Bob Edgar