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09-22-2014, 02:53 AM
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#1 |
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Junior Member
Location: Moscow, Russia Join Date: Nov 2013
Posts: 7
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Tool for viral metagenome assembly with extremely low coverage?
Hello!
I am studying the interaction of bacteria with plasmids and bacteriophages. I have faced with the following problem. I have 30-bp reads of plasmids and phages, that infect a bacteria (genome of host bacteria was eliminated). I need to assemble at least a very short contigs, so I could send them to the Blast. The problem is that some genomes are presented with a very low coverage, but I would not want to throw them out of my analysis. I need a not picky assembler, which could cope with this task. Could you advise me something suitable? Thanks in advance. |
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05-11-2015, 07:06 PM
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#2 |
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Junior Member
Location: Shirley Join Date: Apr 2015
Posts: 4
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Hi, for Metagenomics Sequencing, you can visit this site.
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| Tags |
| low coverage, metagenomics |
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