Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
tblastn and blastx question Nepa10 Bioinformatics 3 09-24-2014 01:07 AM
Cuffnorm Parameters : total hits vs. compatible hits vramnarine RNA Sequencing 0 05-22-2014 12:39 PM
Inquiry of Parsing tblastn result to get nucleotide sequence from the db file sunfuhui Bioinformatics 2 09-12-2012 06:39 AM

Thread Tools
Old 10-29-2014, 08:16 AM   #1
Senior Member
Location: US

Join Date: Apr 2013
Posts: 103
Default translated seq of tblastn hits

From the results of tblastn, how can I get the translated sequence of each hit? Suppose that I tblastn and check representative genome and select an organism. then, I get a list of hits and for each hits, a list of sequences. How can I get the protein seq ID and the translated or amino acid sequence of each nucleotide sequence of the hit?

Look forward to your reply,

carolW is offline   Reply With Quote

ncbi protein seq id, tblastn

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 12:34 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO